Aug 19, 2004 · We find MUSCLE-fast to be the fastest algorithm on all test sets, achieving average alignment accuracy similar to CLUSTALW in times that are typically two to three orders of magnitude less. MUSCLE-fast is able to align 1,000 sequences of average length 282 in 21 seconds on a current desktop computer.. A reliable amino-acid and nucleotide sequences alignment tool To sum it up, ClustalW is a useful and quite efficient program, functioning in command line mode to assist you in aligning. A typical interface of CLUSTAL W is shown in Fig2 . Users are allowed to choose alignment methods (accurate or fast), initial gap opening and extension penalties (0.0-100.0), weight matrices (Pam or BLOSUM) and a cut off percentage of identity (0-100%). There are also options whether to. Align all sequences using Clustal Omega.. clustal omega percent identity matrix ; synology active directory; cse 150 ucsd. the dark room unblocked. 8x42 binoculars distance ... 2000. 2000 model c12 435 horse power 20 front 46. The time required to construct a dendrogram for 100 se- quences is approximately 3 min on a microcomputer. (3) Multiple alignment This is the core of the package. The.